Technically you could run into a problem when you get paid in the
UK because you will have given a foreign address to HMRC, and when you claim the tax treaty exemption so they remit your PAYE withholding to the CRA it won't match the address on your T1, but I doubt it's a big deal.
Far more important though to actually claim the tax treaty exemption and actually remember to file your T1 while you're away!
Steve.